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1

Sketching algorithms for genomic data analysis and querying in a secure enclave

Kockan, Can, Zhu, Kaiyuan, Dokmai, Natnatee, Karpov, Nikolai, Kulekci, M. Oguzhan, Woodruff, David P., Sahinalp, S. Cenk

Journal:

Year:

2020

File:

PDF, 3.02 MB

2020

2

On scrambling the Burrows–Wheeler transform to provide privacy in lossless compression

M. Oğuzhan Külekci

Journal:

Computers & Security

Year:

2012

Language:

english

File:

PDF, 632 KB

english, 2012

3

[IEEE 2007 22nd international symposium on computer and information sciences - Ankara, Turkey (2007.11.7-2007.11.9)] 2007 22nd international symposium on computer and information sciences - Tara: An algorithm for fast searching of multiple patterns on text files

Kulekci, M. Oguzhan

Year:

2007

Language:

english

File:

PDF, 539 KB

english, 2007

4

[IEEE NOMS 2016 - 2016 IEEE/IFIP Network Operations and Management Symposium - Istanbul, Turkey (2016.4.25-2016.4.29)] NOMS 2016 - 2016 IEEE/IFIP Network Operations and Management Symposium - GENCROBAT: Efficient transmission and processing of the massive genomic data

Kulekci, M. Oguzhan, Sagiroglu, M. Gamil

Year:

2016

Language:

english

File:

PDF, 214 KB

english, 2016

5

A System Architecture for Efficient Transmission of Massive DNA Sequencing Data

Sağiroğlu, Mahmut Şamİl, Külekcİ, M. Oğuzhan

Journal:

Journal of Computational Biology

Year:

2017

Language:

english

File:

PDF, 159 KB

english, 2017

6

[IEEE 2015 Data Compression Conference (DCC) - Snowbird, UT, USA (2015.4.7-2015.4.9)] 2015 Data Compression Conference - Range Selection Queries in Data Aware Space and Time

Kulekci, M. Oguzhan, Thankachan, Sharma V.

Year:

2015

Language:

english

File:

PDF, 226 KB

english, 2015

7

BLIM: A New Bit-Parallel Pattern Matching Algorithm Overcoming Computer Word Size Limitation

M. Oğuzhan Külekci

Journal:

Mathematics in Computer Science

Year:

2010

Language:

english

File:

PDF, 354 KB

english, 2010

8

[IEEE 2011 First International Conference on Data Compression, Communications and Processing (CCP) - Palinuro, Cilento Coast, Italy (2011.06.21-2011.06.24)] 2011 First International Conference on Data Compression, Communications and Processing - A Method to Ensure the Confidentiality of the Compressed Data

Kulekci, M. Oguzhan

Year:

2011

Language:

english

File:

PDF, 186 KB

english, 2011

9

[IEEE 2013 IEEE International Symposium on Information Theory (ISIT) - Istanbul, Turkey (2013.07.7-2013.07.12)] 2013 IEEE International Symposium on Information Theory - Uniquely decodable and directly accessible non-prefix-free codes via wavelet trees

Kulekci, M. Oguzhan

Year:

2013

Language:

english

File:

PDF, 135 KB

english, 2013

10

The order-preserving pattern matching problem in practice

Cantone, Domenico, Faro, Simone, Külekci, M. Oğuzhan

Journal:

Discrete Applied Mathematics

Year:

2018

Language:

english

File:

PDF, 692 KB

english, 2018

11

[ACM Press the ACM Conference - Orlando, Florida (2012.10.07-2012.10.10)] Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12 - On enumerating the DNA sequences

Külekci, M. Oǧuzhan

Year:

2012

Language:

english

File:

PDF, 322 KB

english, 2012

12

Applications of Non-Uniquely Decodable Codes to Privacy-Preserving High-Entropy Data Representation

Külekci, Muhammed Oğuzhan, Öztürk, Yasin

Journal:

Year:

2019

Language:

english

File:

PDF, 344 KB

english, 2019

13

A Two-Level Scheme for Quality Score Compression

Voges, Jan, Fotouhi, Ali, Ostermann, Jörn, Külekci, Muhammed Oğuzhan

Journal:

Journal of Computational Biology

Year:

2018

Language:

english

File:

PDF, 693 KB

english, 2018

14

[IEEE 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Hong Kong, China (2010.12.18-2010.12.21)] 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - PSI-RA: A parallel sparse index for read alignment on genomes

Kulekci, M. Oguzhan, Hon, Wing-Kai, Shah, Rahul, Vitter, Jeffrey Scott, Xu, Bojian

Year:

2010

Language:

english

File:

PDF, 404 KB

english, 2010

15

[IEEE 2017 25th Signal Processing and Communications Applications Conference (SIU) - Antalya, Turkey (2017.5.15-2017.5.18)] 2017 25th Signal Processing and Communications Applications Conference (SIU) - Security analysis on the ADS-B technology

Kocaaga, Eren, Kulekci, M. Oguzhan

Year:

2017

Language:

turkish

File:

PDF, 838 KB

turkish, 2017

16

A simple yet time-optimal and linear-space algorithm for shortest unique substring queries

İleri, Atalay Mert, Külekci, M. Oğuzhan, Xu, Bojian

Journal:

Theoretical Computer Science

Year:

2015

Language:

english

File:

PDF, 514 KB

english, 2015

17

Range selection and predecessor queries in data aware space and time

Külekci, M. Oğuzhan, Thankachan, Sharma V.

Journal:

Journal of Discrete Algorithms

Year:

2017

Language:

english

File:

PDF, 571 KB

english, 2017

18

[IEEE 2014 Data Compression Conference (DCC) - Snowbird, UT, USA (2014.3.26-2014.3.28)] 2014 Data Compression Conference - Enhanced Variable-Length Codes: Improved Compression with Efficient Random Access

Kulekci, Muhammed Oguzhan

Year:

2014

Language:

english

File:

PDF, 232 KB

english, 2014

19

A Two-Level Scheme for Quality Score Compression

Voges, Jan, Fotouhi, Ali, Ostermann, Jörn, Külekci, Muhammed Oğuzhan

Journal:

Journal of Computational Biology

Year:

2018

File:

PDF, 693 KB

2018

20

[IEEE 2011 Data Compression Conference (DCC) - Snowbird, UT, USA (2011.03.29-2011.03.31)] 2011 Data Compression Conference - Compressed Context Modeling for Text Compression

Kulekci, M. Oguzhan

Year:

2011

Language:

english

File:

PDF, 162 KB

english, 2011

21

Engineering order-preserving pattern matching with SIMD parallelism

Chhabra, Tamanna, Faro, Simone, Külekci, M. Oğuzhan, Tarhio, Jorma

Journal:

Software: Practice and Experience

Year:

2016

Language:

english

File:

PDF, 377 KB

english, 2016

22

Ψ-RA: a parallel sparse index for genomic read alignment

M Oğuzhan Külekci, Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter, Bojian Xu

Journal:

Year:

2011

Language:

english

File:

PDF, 286 KB

english, 2011

23

Fast and flexible packed string matching

Faro, Simone, Külekci, M. Oğuzhan

Journal:

Journal of Discrete Algorithms

Year:

2014

Language:

english

File:

PDF, 402 KB

english, 2014

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